The JAVA program for “Phylomap” can be downloaded here.

Please note we have used the JAMA package in the implementation, which can be downloaded from

We used Phylip to build the phylogenetic tree, for more information about Phylip, please visit their website (

The result of the Phylomap can be plotted in Matlab, a sample plot function can be downloaded here.

If you need more information about Phylomap, please contact: